Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer.
Document Type
Article
Publication Date
8-1-2022
Publication Title
Nature genetics
Keywords
washington; swedish; swedish cancer; genomics; DNA-Binding Proteins; Genetic Predisposition to Disease; Genome-Wide Association Study; Humans; Lung Neoplasms; Polymorphism, Single Nucleotide; Quantitative Trait Loci; RNA-Binding Proteins
Abstract
To identify new susceptibility loci to lung cancer among diverse populations, we performed cross-ancestry genome-wide association studies in European, East Asian and African populations and discovered five loci that have not been previously reported. We replicated 26 signals and identified 10 new lead associations from previously reported loci. Rare-variant associations tended to be specific to populations, but even common-variant associations influencing smoking behavior, such as those with CHRNA5 and CYP2A6, showed population specificity. Fine-mapping and expression quantitative trait locus colocalization nominated several candidate variants and susceptibility genes such as IRF4 and FUBP1. DNA damage assays of prioritized genes in lung fibroblasts indicated that a subset of these genes, including the pleiotropic gene IRF4, potentially exert effects by promoting endogenous DNA damage.
Clinical Institute
Cancer
Department
Oncology
Department
Pulmonary Medicine
Recommended Citation
Byun, Jinyoung; Han, Younghun; Li, Yafang; Xia, Jun; Long, Erping; Choi, Jiyeon; Xiao, Xiangjun; Zhu, Meng; Zhou, Wen; Sun, Ryan; Bossé, Yohan; Song, Zhuoyi; Schwartz, Ann; Lusk, Christine; Rafnar, Thorunn; Stefansson, Kari; Zhang, Tongwu; Zhao, Wei; Pettit, Rowland W; Liu, Yanhong; Li, Xihao; Zhou, Hufeng; Walsh, Kyle M; Gorlov, Ivan; Gorlova, Olga; Zhu, Dakai; Rosenberg, Susan M; Pinney, Susan; Bailey-Wilson, Joan E; Mandal, Diptasri; de Andrade, Mariza; Gaba, Colette; Willey, James C; You, Ming; Anderson, Marshall; Wiencke, John K; Albanes, Demetrius; Lam, Stephan; Tardon, Adonina; Chen, Chu; Goodman, Gary E; Bojeson, Stig; Brenner, Hermann; Landi, Maria Teresa; Chanock, Stephen J; Johansson, Mattias; Muley, Thomas; Risch, Angela; Wichmann, H-Erich; Bickeböller, Heike; Christiani, David C; Rennert, Gad; Arnold, Susanne; Field, John K; Shete, Sanjay; Le Marchand, Loic; Melander, Olle; Brunnstrom, Hans; Liu, Geoffrey; Andrew, Angeline S; Kiemeney, Lambertus A; Shen, Hongbing; Zienolddiny, Shanbeh; Grankvist, Kjell; Johansson, Mikael; Caporaso, Neil; Cox, Angela; Hong, Yun-Chul; Yuan, Jian-Min; Lazarus, Philip; Schabath, Matthew B; Aldrich, Melinda C; Patel, Alpa; Lan, Qing; Rothman, Nathaniel; Taylor, Fiona; Kachuri, Linda; Witte, John S; Sakoda, Lori C; Spitz, Margaret; Brennan, Paul; Lin, Xihong; McKay, James; Hung, Rayjean J; and Amos, Christopher I, "Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer." (2022). Articles, Abstracts, and Reports. 6424.
https://digitalcommons.providence.org/publications/6424
